BarleyVarDB: a database of barley genomic variation. Database

BarleyVarDB is a comprehensive genomic variation database for Barley. In summary, BarleyVar database mainly includes three types of data.

Data Processing and Validation

The detailed methodology and relevant analysis scripts for genomic variation detection for the collected sequencing data can refer to our Github site. Briefly, all clean reads were mapped to the barley pseudo-molecular reference using BWA-MEN with default parameters, and SNPs/InDels were detected by running two rounds of variants calling analysis using SAMTools/BCFTools pipline and GATK. The accuracy of SNP and INDEL calling was up to 98.95% and evaluated using one of the largest de novel assemblied contigs (Bowman_contig_843756:34,593 bp).

Please cite us:

Tan,C., Chapman,B., Wang,P. et al. BarleyVarDB: a database of barley genomic variation. Database (2020). doi:10.1093/database/baaa091.

IBGSC.A chromosome conformation capture ordered sequence of the barley genome. Nature (2017). doi:10.1038/nature22043