New items – 100 total

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• bc-GenExMiner 4.5: new mining module computes breast cancer differential gene expression analyses

  https://pubmed.ncbi.nlm.nih.gov/33599248/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 02/18/2021

• An update of KAIKObase, the silkworm genome database

  https://pubmed.ncbi.nlm.nih.gov/33645624/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/01/2021

• HIR V2: a human interactome resource for the biological interpretation of differentially expressed genes via gene set linkage analysis

  https://pubmed.ncbi.nlm.nih.gov/33677507/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/07/2021

• UbiNet 2.0: a verified, classified, annotated and updated database of E3 ubiquitin ligase-substrate interactions

  https://pubmed.ncbi.nlm.nih.gov/33693667/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/11/2021

• CMBD: a manually curated cancer metabolic biomarker knowledge database

  https://pubmed.ncbi.nlm.nih.gov/33693668/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/11/2021

• Development of a biomarker database toward performing disease classification and finding disease interrelations

  https://pubmed.ncbi.nlm.nih.gov/33705530/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/11/2021

• An immunologically friendly classification of non-peptidic ligands

  https://pubmed.ncbi.nlm.nih.gov/33772585/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/27/2021

• Bioinformatics tools developed to support BioCompute Objects

  https://pubmed.ncbi.nlm.nih.gov/33784373/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/30/2021

• Wormicloud: a new text summarization tool based on word clouds to explore the C. elegans literature

  https://pubmed.ncbi.nlm.nih.gov/33787871/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/31/2021

• Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning

  https://pubmed.ncbi.nlm.nih.gov/33787872/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 03/31/2021

• MENSAdb: a thorough structural analysis of membrane protein dimers

  https://pubmed.ncbi.nlm.nih.gov/33822911/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 04/06/2021

• Posttranslational modifications in proteins: resources, tools and prediction methods

  https://pubmed.ncbi.nlm.nih.gov/33826699/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 04/07/2021

• H3ABioNet genomic medicine and microbiome data portals hackathon proceedings

  https://pubmed.ncbi.nlm.nih.gov/33864455/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 04/17/2021

• BC-TFdb: a database of transcription factor drivers in breast cancer

  https://pubmed.ncbi.nlm.nih.gov/33882119/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 04/21/2021

• APICURON: a database to credit and acknowledge the work of biocurators

  https://pubmed.ncbi.nlm.nih.gov/33882120/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 04/21/2021

• Tripal MegaSearch: a tool for interactive and customizable query and download of big data

  https://pubmed.ncbi.nlm.nih.gov/33900378/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 04/26/2021

• Increasing metadata coverage of SRA BioSample entries using deep learning-based named entity recognition

  https://pubmed.ncbi.nlm.nih.gov/33914028/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 04/29/2021

• IBDDB: a manually curated and text-mining-enhanced database of genes involved in inflammatory bowel disease

  https://pubmed.ncbi.nlm.nih.gov/33929018/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 04/30/2021

• CANNUSE, a database of traditional Cannabis uses-an opportunity for new research

  https://pubmed.ncbi.nlm.nih.gov/33942873/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 05/04/2021

• Human IRES Atlas: an integrative platform for studying IRES-driven translational regulation in humans

  https://pubmed.ncbi.nlm.nih.gov/33942874/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 05/04/2021

• COVIDOUTCOME-estimating COVID severity based on mutation signatures in the SARS-CoV-2 genome

  https://pubmed.ncbi.nlm.nih.gov/33963845/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 05/08/2021

• covid19census: U.S. and Italy COVID-19 metrics and other epidemiological data

  https://pubmed.ncbi.nlm.nih.gov/33991092/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 05/15/2021

• Challenges for FAIR-compliant description and comparison of crop phenotype data with standardized controlled vocabularies

  https://pubmed.ncbi.nlm.nih.gov/33991093/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 05/15/2021

• An overview of graph databases and their applications in the biomedical domain

  https://pubmed.ncbi.nlm.nih.gov/34003247/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 05/18/2021

• Application of beta and gamma carbonic anhydrase sequences as tools for identification of bacterial contamination in the whole genome sequence of inbred Wuzhishan minipig (Sus scrofa) annotated in databases

  https://pubmed.ncbi.nlm.nih.gov/34003248/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20220130094329&v=2.17.5

  Database (Oxford) 05/18/2021

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