New items – 100 total

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• LICEDB: light industrial core enzyme database for industrial applications and AI enzyme design

  https://pubmed.ncbi.nlm.nih.gov/39980225/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 02/21/2025

• Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database

  https://pubmed.ncbi.nlm.nih.gov/39982792/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 02/21/2025

• MANUDB: database and application to retrieve and visualize mammalian NUMTs

  https://pubmed.ncbi.nlm.nih.gov/39985319/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 02/22/2025

• PotatoBSLnc: a curated repository of potato long noncoding RNAs in response to biotic stress

  https://pubmed.ncbi.nlm.nih.gov/39985759/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 02/22/2025

• TcEVdb: a database for T-cell-derived small extracellular vesicles from single-cell transcriptomes

  https://pubmed.ncbi.nlm.nih.gov/40036846/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 03/04/2025

• ForestForward: visualizing and accessing integrated world forest data from the last 50 years

  https://pubmed.ncbi.nlm.nih.gov/40037615/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 03/04/2025

• gymnotoa-db: a database and application to optimize functional annotation in gymnosperms

  https://pubmed.ncbi.nlm.nih.gov/40052362/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 03/07/2025

• Pipeline to explore information on genome editing using large language models and genome editing meta-database

  https://pubmed.ncbi.nlm.nih.gov/40056431/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 03/08/2025

• VarGuideAtlas: a repository of variant interpretation guidelines

  https://pubmed.ncbi.nlm.nih.gov/40067792/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 03/11/2025

• Post-composing ontology terms for efficient phenotyping in plant breeding

  https://pubmed.ncbi.nlm.nih.gov/40117331/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 03/21/2025

• A comprehensive experimental comparison between federated and centralized learning

  https://pubmed.ncbi.nlm.nih.gov/40118779/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 03/21/2025

• mirTarCLASH: a comprehensive miRNA target database based on chimeric read-based experiments

  https://pubmed.ncbi.nlm.nih.gov/40186419/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 04/05/2025

• GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data

  https://pubmed.ncbi.nlm.nih.gov/40214100/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 04/11/2025

• AFED, a comprehensive resource for Aspergillus flavus gene expression profiling

  https://pubmed.ncbi.nlm.nih.gov/40250417/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 04/18/2025

• Localizatome: a database for stress-dependent subcellular localization changes in proteins

  https://pubmed.ncbi.nlm.nih.gov/40257905/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 04/21/2025

• MIPD: Molecules, Imagings, and Clinical Phenotype Integrated Database

  https://pubmed.ncbi.nlm.nih.gov/40257906/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 04/21/2025

• CPDMS: a database system for crop physiological disorder management

  https://pubmed.ncbi.nlm.nih.gov/40261733/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 04/22/2025

• Mapping assays to the key characteristics of carcinogens to support decision-making

  https://pubmed.ncbi.nlm.nih.gov/40261741/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 04/22/2025

• STCDB4ND: a signal transduction classification database for neurological diseases

  https://pubmed.ncbi.nlm.nih.gov/40315246/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 05/02/2025

• A longitudinal analysis of function annotations of the human proteome reveals consistently high biases

  https://pubmed.ncbi.nlm.nih.gov/40338520/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 05/08/2025

• CancerPPD2: an updated repository of anticancer peptides and proteins

  https://pubmed.ncbi.nlm.nih.gov/40338521/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 05/08/2025

• GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database

  https://pubmed.ncbi.nlm.nih.gov/40343712/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 05/09/2025

• An exploratory study combining Virtual Reality and Semantic Web for life science research using Graph2VR

  https://pubmed.ncbi.nlm.nih.gov/40392751/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 05/20/2025

• Enhancing biomedical relation extraction through data-centric and preprocessing-robust ensemble learning approach

  https://pubmed.ncbi.nlm.nih.gov/40402771/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 05/22/2025

• Protein Sequence Analysis landscape: A Systematic Review of Task Types, Databases, Datasets, Word Embeddings Methods, and Language Models

  https://pubmed.ncbi.nlm.nih.gov/40448683/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20250605221554&v=2.18.0.post9+e462414

  Database (Oxford) 05/31/2025

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