New items – 100 total

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• Helping authors produce FAIR taxonomic data: evaluation of an author-driven phenotype data production prototype

  https://pubmed.ncbi.nlm.nih.gov/39879563/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 01/29/2025

• Expression of Concern: DisGeNet: a disease-centric interaction database among diseases and various associated genes

  https://pubmed.ncbi.nlm.nih.gov/39888724/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 01/31/2025

• LitSumm: large language models for literature summarization of noncoding RNAs

  https://pubmed.ncbi.nlm.nih.gov/39908113/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/05/2025

• Working in biocuration: contemporary experiences and perspectives

  https://pubmed.ncbi.nlm.nih.gov/39937660/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/12/2025

• AnnCovDB: a manually curated annotation database for mutations in SARS-CoV-2 spike protein

  https://pubmed.ncbi.nlm.nih.gov/39937661/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/12/2025

• Building resource-efficient community databases using open-source software

  https://pubmed.ncbi.nlm.nih.gov/39937662/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/12/2025

• Assessing the performance of generative artificial intelligence in retrieving information against manually curated genetic and genomic data

  https://pubmed.ncbi.nlm.nih.gov/39963877/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/18/2025

• Correction to: CardioHotspots: a database of mutational hotspots for cardiac disorders

  https://pubmed.ncbi.nlm.nih.gov/39963878/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/18/2025

• TumorAgDB1.0: tumor neoantigen database platform

  https://pubmed.ncbi.nlm.nih.gov/39968950/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/19/2025

• LICEDB: light industrial core enzyme database for industrial applications and AI enzyme design

  https://pubmed.ncbi.nlm.nih.gov/39980225/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/21/2025

• Integrating AI-powered text mining from PubTator into the manual curation workflow at the Comparative Toxicogenomics Database

  https://pubmed.ncbi.nlm.nih.gov/39982792/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/21/2025

• MANUDB: database and application to retrieve and visualize mammalian NUMTs

  https://pubmed.ncbi.nlm.nih.gov/39985319/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/22/2025

• PotatoBSLnc: a curated repository of potato long noncoding RNAs in response to biotic stress

  https://pubmed.ncbi.nlm.nih.gov/39985759/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 02/22/2025

• TcEVdb: a database for T-cell-derived small extracellular vesicles from single-cell transcriptomes

  https://pubmed.ncbi.nlm.nih.gov/40036846/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 03/04/2025

• ForestForward: visualizing and accessing integrated world forest data from the last 50 years

  https://pubmed.ncbi.nlm.nih.gov/40037615/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 03/04/2025

• gymnotoa-db: a database and application to optimize functional annotation in gymnosperms

  https://pubmed.ncbi.nlm.nih.gov/40052362/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 03/07/2025

• Pipeline to explore information on genome editing using large language models and genome editing meta-database

  https://pubmed.ncbi.nlm.nih.gov/40056431/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 03/08/2025

• VarGuideAtlas: a repository of variant interpretation guidelines

  https://pubmed.ncbi.nlm.nih.gov/40067792/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 03/11/2025

• Post-composing ontology terms for efficient phenotyping in plant breeding

  https://pubmed.ncbi.nlm.nih.gov/40117331/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 03/21/2025

• A comprehensive experimental comparison between federated and centralized learning

  https://pubmed.ncbi.nlm.nih.gov/40118779/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 03/21/2025

• mirTarCLASH: a comprehensive miRNA target database based on chimeric read-based experiments

  https://pubmed.ncbi.nlm.nih.gov/40186419/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 04/05/2025

• GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data

  https://pubmed.ncbi.nlm.nih.gov/40214100/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 04/11/2025

• AFED, a comprehensive resource for Aspergillus flavus gene expression profiling

  https://pubmed.ncbi.nlm.nih.gov/40250417/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 04/18/2025

• Localizatome: a database for stress-dependent subcellular localization changes in proteins

  https://pubmed.ncbi.nlm.nih.gov/40257905/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 04/21/2025

• MIPD: Molecules, Imagings, and Clinical Phenotype Integrated Database

  https://pubmed.ncbi.nlm.nih.gov/40257906/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20251126082834&v=2.18.0.post22+67771e2

  Database (Oxford) 04/21/2025

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