New items – 100 total

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• Mapping assays to the key characteristics of carcinogens to support decision-making

  https://pubmed.ncbi.nlm.nih.gov/40261741/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 04/22/2025

• STCDB4ND: a signal transduction classification database for neurological diseases

  https://pubmed.ncbi.nlm.nih.gov/40315246/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 05/02/2025

• A longitudinal analysis of function annotations of the human proteome reveals consistently high biases

  https://pubmed.ncbi.nlm.nih.gov/40338520/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 05/08/2025

• CancerPPD2: an updated repository of anticancer peptides and proteins

  https://pubmed.ncbi.nlm.nih.gov/40338521/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 05/08/2025

• GenDiS3 database: census on the prevalence of protein domain superfamilies of known structure in the entire sequence database

  https://pubmed.ncbi.nlm.nih.gov/40343712/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 05/09/2025

• An exploratory study combining Virtual Reality and Semantic Web for life science research using Graph2VR

  https://pubmed.ncbi.nlm.nih.gov/40392751/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 05/20/2025

• Enhancing biomedical relation extraction through data-centric and preprocessing-robust ensemble learning approach

  https://pubmed.ncbi.nlm.nih.gov/40402771/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 05/22/2025

• Protein Sequence Analysis landscape: A Systematic Review of Task Types, Databases, Datasets, Word Embeddings Methods, and Language Models

  https://pubmed.ncbi.nlm.nih.gov/40448683/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 05/31/2025

• CAS: enhancing implicit constrained data augmentation with semantic enrichment for biomedical relation extraction and beyond

  https://pubmed.ncbi.nlm.nih.gov/40607815/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 07/03/2025

• A database on the historical and current occurrences of snakes in Eswatini

  https://pubmed.ncbi.nlm.nih.gov/40625129/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 07/08/2025

• BgDB: a comprehensive genomic resource information system of bitter gourd for accelerated breeding programme

  https://pubmed.ncbi.nlm.nih.gov/40625145/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 07/08/2025

• PLoV: a comprehensive database of genetic variants leading to pregnancy loss

  https://pubmed.ncbi.nlm.nih.gov/40625169/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 07/08/2025

• Correction to: GymnoTOA-db: a database and application to optimize functional annotation in gymnosperms

  https://pubmed.ncbi.nlm.nih.gov/40626795/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 07/08/2025

• Integrated data-driven biotechnology research environments

  https://pubmed.ncbi.nlm.nih.gov/40996701/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• A review on Gene Ontology evaluations

  https://pubmed.ncbi.nlm.nih.gov/40996702/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• The Microbe Directory: a centralized database for biological interpretation of microbiome data

  https://pubmed.ncbi.nlm.nih.gov/40996703/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• Automatic genetic phenotype normalization from dysmorphology physical examinations: an overview of the BioCreative VIII-Task 3 competition

  https://pubmed.ncbi.nlm.nih.gov/40996704/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• The impact of curation errors in the PDBBind Database on machine learning predictions of protein-protein binding affinity

  https://pubmed.ncbi.nlm.nih.gov/40996705/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• p53motifDB: integration of genomic information and tumour suppressor p53 binding motifs

  https://pubmed.ncbi.nlm.nih.gov/40996706/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• MRdb: a comprehensive database of univariate and multivariate Mendelian randomization with large-scale GWAS summary data

  https://pubmed.ncbi.nlm.nih.gov/40996707/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• Empirical substitution models of protein evolution: database, relationships, and modeling considerations

  https://pubmed.ncbi.nlm.nih.gov/40996708/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• Gene Loss DB: a curated database for gene loss in mammals-the cetacean collection

  https://pubmed.ncbi.nlm.nih.gov/40996709/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• Biomedical literature-based clinical phenotype definition discovery using large language models

  https://pubmed.ncbi.nlm.nih.gov/40996710/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• ScLineageAtlas: a comprehensive single-cell genomics database for characterizing cellular clones in cancer

  https://pubmed.ncbi.nlm.nih.gov/40996711/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

• StrainInfo-the central database for linked microbial strain identifiers

  https://pubmed.ncbi.nlm.nih.gov/40996712/?utm_source=Other&utm_medium=rss&utm_campaign=journals&utm_content=101517697&fc=None&ff=20260712112824&v=2.20.0

  Database (Oxford) 09/25/2025

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