ChannelsDB 2.0: a comprehensive database of protein tunnels and pores in AlphaFold era

(database[TitleAbstract]) AND (Nucleic acids research[Journal]) 2024-08-21

Summary:

ChannelsDB 2.0 is an updated database providing structural information about the position, geometry and physicochemical properties of protein channels-tunnels and pores-within deposited biomacromolecular structures from PDB and AlphaFoldDB databases. The newly deposited information originated from several sources. Firstly, we included data calculated using a popular CAVER tool to complement the data obtained using original MOLE tool for detection and analysis of protein tunnels and pores....

Link:

https://pubmed.ncbi.nlm.nih.gov/37956324/?utm_source=Other&utm_medium=rss&utm_campaign=pubmed-2&utm_content=1VsHRGSo3HX0CgC40wRgBdaScQKv8CRE2sO_GaWJzhPEXTSQfX&fc=20220129230418&ff=20240821203933&v=2.18.0.post9+e462414

From feeds:

📚BioDBS Bibliography » (database[TitleAbstract]) AND (Nucleic acids research[Journal])

Authors:

Anna Špačková, Ondřej Vávra, Tomáš Raček, Václav Bazgier, David Sehnal, Jiří Damborský, Radka Svobodová, David Bednář, Karel Berka

Date tagged:

08/21/2024, 20:39

Date published:

11/13/2023, 06:00