ECOD: integrating classifications of protein domains from experimental and predicted structures

(database[TitleAbstract]) AND (Nucleic acids research[Journal]) 2025-06-07

Summary:

The evolutionary classification of protein domains (ECOD) classifies protein domains using a combination of sequence and structural data (http://prodata.swmed.edu/ecod). Here we present the culmination of our previous efforts at classifying domains from predicted structures, principally from the AlphaFold Database (AFDB), by integrating these domains with our existing classification of PDB structures. This combined classification includes both domains from our previous, purely experimental,...

Link:

https://pubmed.ncbi.nlm.nih.gov/39565196/?utm_source=Other&utm_medium=rss&utm_campaign=pubmed-2&utm_content=1VsHRGSo3HX0CgC40wRgBdaScQKv8CRE2sO_GaWJzhPEXTSQfX&fc=20220129230418&ff=20250607002255&v=2.18.0.post9+e462414

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📚BioDBS Bibliography » (database[TitleAbstract]) AND (Nucleic acids research[Journal])

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Authors:

R Dustin Schaeffer, Kirill E Medvedev, Antonina Andreeva, Sara Rocio Chuguransky, Beatriz Lazaro Pinto, Jing Zhang, Qian Cong, Alex Bateman, Nick V Grishin

Date tagged:

06/07/2025, 00:23

Date published:

11/20/2024, 06:00